RO-Crate Outreach and Publications

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Cite RO-Crate
Recent publications, presentations, citations
1. 2022
2021
Upcoming and recent events
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Please submit your RO-Crate-related contributions (including RO-Crate deposits!) to the Zenodo ResearchObject community.

Cite RO-Crate

Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José M. Fernández, Daniel Garijo, Björn Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble (2022):
Packaging research artefacts with RO-Crate.
Data Science 5(2)
https://doi.org/10.3233/DS-210053

Recent publications, presentations, citations

2022

Justin Clark-Casey, Stian Soiland-Reyes (2022):
Making EOSC Research Objects FAIR with RO-Crate: A common metadata overlay for EOSC repositories.
EOSC Symposium 2022
https://doi.org/10.5281/zenodo.7323480

Carole Goble, Stian Soiland-Reyes (2022):
RO-Crate: packaging metadata love notes into FAIR Digital Objects. (Keynote)
Helmholtz Metadata Collaboration conference 2022, virtual, 2022-10-05/–06.
https://doi.org/10.5281/zenodo.7147703

Gerrit Günther, Jan Schweikert, Oonagh Mannix, Wolfgang Süß (2022):
Use Cases in HMC – from Generation to Reuse of Data.
Helmholtz Metadata Collaboration conference 2022, virtual, 2022-10-05/–06.
https://doi.org/10.5281/zenodo.7157694

Roman Gerlach (2022):
Datenverarbeitungsprozesse planen und dokumentieren - Eine Einführung in Research Objects und RO-Crate.
FDM Thuringen Coffee Lecture, 2022-11-30.
https://doi.org/10.5281/zenodo.7385632 [video] [slides]

Fidan Limani (2022):
FAIR Digital Objects and Linked Data.
Semantic Web in Libraries (SWIB22), 2022-11-28/-12-02
https://www.youtube.com/watch?v=BpUrQYIX2IA

Aben G, Hößelbarth J (2022):
Starting FDO in the Cradle – ROcrating Live Data.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e95972
https://doi.org/10.3897/rio.8.e95972 [poster]

Stian Soiland-Reyes, Leyla Jael Castro, Daniel Garijo, Marc Portier, Carole Goble, Paul Groth (2022):
Updating Linked Data practices for FAIR Digital Object principles.
1st International Conference on FAIR Digital Objects (FDO 2022) (presentation).
Research Ideas and Outcomes 8:e94501
https://doi.org/10.3897/rio.8.e94501 [slides]

Soiland-Reyes S, Sefton P, Castro LJ, Coppens F, Garijo D, Leo S, Portier M, Groth P (2022):
Creating lightweight FAIR Digital Objects with RO-Crate.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e93937
https://doi.org/10.3897/rio.8.e93937 [poster]

Woolland O, Brack P, Soiland-Reyes S, Scott B, Livermore L (2022):
Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e94349
https://doi.org/10.3897/rio.8.e94349 [poster]

De Geest P, Coppens F, Soiland-Reyes S, Eguinoa I, Leo S (2022):
Enhancing RDM in Galaxy by integrating RO-Crate.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e95164
https://doi.org/10.3897/rio.8.e95164 [poster]

Giraldo O, Alves R, Bampalikis D, Fernandez JM, Martin del Pico E, Psomopoulos FE, Via A, Castro LJ (2022):
A FAIRification roadmap for ELIXIR Software Management Plans.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e94608
https://doi.org/10.3897/rio.8.e94608 [poster]

Niehues A, de Visser C, Hagenbeek FA, Karu N, Kindt ASD, Kulkarni P, Pool R, Boomsma DI, van Dongen J, van Gool AJ, ‘t Hoen PAC (2022):
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object.
1st International Conference on FAIR Digital Objects (FDO 2022) (poster)
Research Ideas and Outcomes 8: e94042.
https://doi.org/10.3897/rio.8.e94042 [poster]

Hirotaka Suetake, Tsukasa Fukusato, Takeo Igarashi, Tazro Ohta (2022):
A workflow reproducibility scale for automatic validation of biological interpretation results bioRxiv 2022.10.11.511695 https://doi.org/10.1101/2022.10.11.511695

Renske de Wit (2022):
A Non-Intimidating Approach to Workflow Reproducibility in Bioinformatics: Adding Metadata to Research Objects through the Design and Evaluation of Use-Focused Extensions to CWLProv.
Master thesis, Vrije Universiteit Amsterdam / Zenodo.
https://doi.org/10.5281/zenodo.7113250 [video] [slides] https://doi.org/10.5281/zenodo.7113250 [video] [slides]

Tazro Ohta, Hirotaka Suetake (2022):
Verifying workflow reproducibility using RO-Crate.
Workflow Run Crate Meeting 2022-09-27
https://youtu.be/LFoX0wnTfuc

Esteban González, Alejandro Benítez & Daniel Garijo (2022):
FAIROs: Towards FAIR Assessment in Research Objects.
TPDL 2022: Linking Theory and Practice of Digital Libraries
https://doi.org/10.1007/978-3-031-16802-4_6 [preprint]

Nikola Tzochev, Andreas Pfeil (2022):
A Java Library for RO-Crate
RO-Crate community call, 2022-08-25.
[video] [slides] https://doi.org/10.5281/zenodo.7025336

Abigail Miller (2022):
BioConnect Data Packages: Use of RO-Crate, ISA model and Frictionless Data.
RO-Crate community call, 2022-07-28.
[video] [slides] [transcript] [example] https://doi.org/10.5281/zenodo.7116702

Carole Goble, Stian Soiland-Reyes (2022):
RO-Crate for Research Reproducibility & Data Management.
ELIXIR All Hands Meeting, Amsterdam, 2022-06-08
https://doi.org/10.5281/zenodo.6793758

Nick Thieberger, Amanda Harris (2022):
When Your Data is My Grandparents Singing. Digitisation and Access for Cultural Records, the Pacific and Regional Archive for Digital Sources in Endangered Cultures (PARADISEC).
Data Science Journal 21(1)
https://doi.org/10.5334/dsj-2022-009

Max Schröder, Susanne Staehlke, Paul Groth, J. Barbara Nebe, Sascha Spors & Frank Krüger (2022):
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.
Journal of Biomedical Semantics 13:4 https://doi.org/10.1186/s13326-021-00257-x

Stian Soiland-Reyes, Genís Bayarri, Pau Andrio, Robin Long, Douglas Lowe, Ania Niewielska, Adam Hospital, Paul Groth (2022):
Making Canonical Workflow Building Blocks interoperable across workflow languages.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00135

Alex Hardisty, Paul Brack, Carole Goble, Laurence Livermore, Ben Scott, Quentin Groom, Stuart Owen, Stian Soiland-Reyes (2022):
The Specimen Data Refinery: A canonical workflow framework and FAIR Digital Object approach to speeding up digital mobilisation of natural history collections.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00134

Marc Portier, Cedric Decruw, Katrina Exter, Rory Meyer, Lennert Tyberghein, Laurian Van Maldeghem (2022):
Contemporary Data Management for Biodiversity Observation Networks leading to Linked Open Data Publishing through Distributed Techniques applying RO-Crate and GitHub Actions.
Biodiversity Information Standards (TDWG 2022), Sofia, Bulgaria.
Biodiversity Information Science and Standards 6:e94630
https://doi.org/10.3897/biss.6.94630

Amirpasha Mozaffari, Michael Langguth, Bing Gong, Jessica Ahring, Adrian Rojas Campos, Pascal Nieters, Otoniel José Campos Escobar, Martin Wittenbrink, Peter Baumann, Martin G. Schultz (2022):
HPC-oriented Canonical Workflows for Machine Learning Applications in Climate and Weather Prediction.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00131

Peter Wittenburg, Alex Hardisty, Yann Le Franc, Amirpasha Mozaffari, Limor Peer, Nikolay A. Skvortsov, Zhiming Zhao, Alessandro Spinuso (2022):
Canonical Workflows to Make Data FAIR.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00132

Beatriz Serrano-Solano, Anne Fouilloux, Ignacio Eguinoa, Matúš Kalaš, Björn Grüning, Frederik Coppens (2022):
Galaxy: A Decade of Realising CWFR Concepts.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00136

Thomas Jejkal, Sabrine Chelbi, Andreas Pfeil, Peter Wittenburg (2022):
Evaluation of Application Possibilities for Packaging Technologies in Canonical Workflows.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00137

Nikolay A. Skvortsov, Sergey A. Stupnikov (2022):
A Semantic Approach to Workflow Management and Reuse for Research Problem Solving.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00142

Andreas Pfeil, Thomas Jejkal, Danah Tonne, Germaine Götzelmann (2022): From a Dynamic Image Annotation Process within the Humanities to a Canonical Workflow.
Data Intelligence 4(2)
https://doi.org/10.1162/dint_a_00138

Marc Portier (2022):
Data Publishing with RO-Crate and git.
Open Belgium 2022, 2022-04-29.

Luiz Gadelha, Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries (2022):
Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities.
arXiv 2207.06890 [cs.DB]
https://doi.org/10.48550/arXiv.2207.06890

2021

Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg (2021):
The role of metadata in reproducible computational research.
Patterns 2(1):100322 https://doi.org/10.1016/j.patter.2021.100322

Anna-Lena Lamprecht, Magnus Palmblad, Jon Ison, Veit Schwämmle, Mohammad Sadnan Al Manir, Ilkay Altintas, Christopher J. O. Baker, Ammar Ben Hadj Amor, Salvador Capella-Gutierrez, Paulos Charonyktakis, Michael R. Crusoe, Yolanda Gil, Carole Goble, Timothy J. Griffin, Paul Groth, Hans Ienasescu, Pratik Jagtap, Matúš Kalaš, Vedran Kasalica, Alireza Khanteymoori, Tobias Kuhn, Hailiang Mei, Hervé Ménager, Steffen Möller, Robin A. Richardson, Vincent Robert, Stian Soiland-Reyes, Robert Stevens, Szoke Szaniszlo, Suzan Verberne, Aswin Verhoeven, Katherine Wolstencroft (2021):
Perspectives on automated composition of workflows in the life sciences [version 1; peer review: 2 approved].
F1000Research 10:897
https://doi.org/10.12688/f1000research.54159.1

Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, and Theodore Dalamagas (2021):
SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines.
arXiv CoRR arXiv:2103.13138

Marco La Rosa (2021):
From endangered languages to the Science Mesh - petascale FAIR data repositories
CS3MESH4EOSC Blog

田辺浩介, 松田朝彦 (2021):
RO-Crateを用いた材料研究データのデータリポジトリへの登録
Kosuke Tanabe, Asahiko Matsuda (2021):
Ingesting materials research data into a data repository using RO-Crate.
情報知識学会誌 31(4) p. 497-502.
Journal of Japan Society of Information and Knowledge (Jōhō Chishiki Gakkaishi) 31(4) pp. 497-502.
第26回情報知識学フォーラム予稿
26th Information and Knowledge Study Forum, 2021-12-18, Kyoto University, Kyoto, Japan. https://doi.org/10.2964/jsik_2021_067

Myles Axton (2021):
A network database for the human biobank.
Advanced Genetics **2(2):e10049
https://doi.org/10.1002/ggn2.10049

Sonia Natalie Mitchell, Andrew Lahiff, Nathan Cummings, Jonathan Hollocombe, Bram Boskamp, Dennis Reddyhoff, Ryan Field, Kristian Zarebski, Antony Wilson, Martin Burke, Blair Archibald, Paul Bessell, Richard Blackwell, Lisa A Boden, Alys Brett, Sam Brett, Ruth Dundas, Jessica Enright, Alejandra N. Gonzalez-Beltran, Claire Harris, Ian Hinder, Christopher David Hughes, Martin Knight, Vino Mano, Ciaran McMonagle, Dominic Mellor, Sibylle Mohr, Glenn Marion, Louise Matthews, Iain J. McKendrick, Christopher Mark Pooley, Thibaud Porphyre, Aaron Reeves, Edward Townsend, Robert Turner, Jeremy Walton, Richard Reeve (2021):
FAIR Data Pipeline: provenance-driven data management for traceable scientific workflows.
arXiv CoRR arXiv:2110.07117 [q-bio.QM]

Vernon Gayle (2021):
A practical guide to developing research objects when undertaking reproducible statistically orientated social science research during COVID-19.
National Centre for Research Methods https://eprints.ncrm.ac.uk/id/eprint/4465

Daniel S. Katz, Fotis Psomopoulos, Leyla Jael Castro (2021):
Working Towards Understanding the Role of FAIR for Machine Learning.
2nd Workshop on Data and Research Objects Management for Linked Open Science [article] [slides]
https://doi.org/10.4126/FRL01-006429415

Mario Scrocca, Damiano Scandolari, Gloria Re Calegari, Ilaria Baroni, Irene Celino (2021):
The Survey Ontology: Packaging Survey Research as Research Objects.
2nd Workshop on Data and Research Objects Management for Linked Open Science [article] [slides] [ontology] [ro-crate] https://doi.org/10.4126/FRL01-006429412

Stian Soiland-Reyes (2021):
RO-Crate — A brief “crash course”.
ELIXIR Data-Interoperability Joint Platform F2F Hybrid Meeting, 2021-11-23.

Stian Soiland-Reyes (2021):
Reproducibility; Research Objects (RO-Crate) and Common Workflow Language (CWL).
WoSSS21:Workshop on Sustainable Software Sustainability, 2021-10-07. [video recording]

Stian Soiland-Reyes (2021):
Sharing FAIR Research Objects to improve reproducibility.
ZB-Med Seminar, 2021-07-15.
[video recording] https://doi.org/10.5281/zenodo.5105857

Carole Goble (2021):
FAIR Computational Workflows.
JOBIM 2021 (Journées Ouvertes en Biologie, Informatique et Mathématiques), 2021-07-08

Stian Soiland-Reyes (2021):
RO-Crate, workflows and FAIR Digital Objects.
FAIR Digital Object Forum, CWFR & FDO SEM meeting, 2021-07-02 [video recording], [slides] https://doi.org/10.5281/zenodo.5060283

Laura Rodríguez-Navas (2021):
WfExS: a software component to enable the use of RO-Crate in the EOSC-Life collaboratory.
FAIR Digital Object Forum, CWFR & FDO SEM meeting, 2021-07-02 [video recording], [slides]

Laura Rodríguez-Navas (2021):
WfExS: a software component to enable the use of RO-Crate in the EOSC-Life tools collaboratory.
EOSC Symposium 2021, 2021-06-17 [video recording] [slides

Krzysztof Kurowski, Oscar Corcho, Christine Choirat, Magnus Eriksson, Frederik Coppens, Mark van de Sanden, Milan Ojsteršek (2021):
EOSC Interoperability Framework.
KI-02-21-055-EN-N. Report from the EOSC Executive Board, Working Groups FAIR and Architecture. Publications Office of the EU.
https://doi.org/10.2777/620649

Oscar Corcho, Raúl Palma, Daniel Garijo (2021):
Metadata models and Research Objects for Earth Observation Data Cubes.
EOSC Symposium 2021, 2021-06-18 [video recording] [slides]

Carole Goble (2021):
FAIR Computational Workflows: the what, why how and who.
ICTESSH 2021 (International Conference on ICT enhanced Social Sciences and Humanities 2022), 2021-06-30

Stian Soiland-Reyes (2021):
Capturing “Just enough” Data, Software and Metadata with RO-Crate.
FAIR Festival 2021, FAIR Implementation Challenges & Solutions, 2021-06-21. https://doi.org/10.5281/zenodo.5007432

Peter Sefton, Marco La Rosa, Michael Lynch (2021):
Arkisto: a repository based platform for managing all kinds of research data.
Open Repositories 2021 (OR2021), 2021-06-10. [video recording] [slides]

Peter Sefton, Stian Soiland-Reyes (2021):
Research Object Crate (RO-Crate) Update
Open Repositories 2021 (OR2021), 2021-06-10. [video recording] [slides]

Stian Soiland-Reyes (2021):
Capturing Just Enough Data, Software and Metadata with RO-Crate.
Dataverse community meeting 2021, Software Metadata and Containerization, 2021-06-17. [video recording] https://doi.org/10.5281/zenodo.4973678

Carole Goble (2021): FAIR Workflows and Research Objects get a Workout. Dataverse community meeting 2021, keynote, 2021-06-15

Stian Soiland-Reyes (2021): Capturing workflow life cycle with RO-Crate. ELIXIR All Hands 2021, Workshop: Workflow Life Cycle, 2021-06-11 https://doi.org/10.5281/zenodo.4926088

Carole Goble, Stian Soiland-Reyes, Oscar Corcho (2021):
Packaging and describing Data Collections with RO-Crate.
2nd Workshop of the Data Citation Community of Practice for Earth, Space, and Environmental Sciences (and Related Sciences) (DataCitationCoP), AGU Data Citation Community of Practice, 2021-06-08.
https://doi.org/10.5281/zenodo.4916168

Stian Soiland-Reyes (2021):
Describing and packaging workflows using RO-Crate and BioCompute Objects.
Webinar for U.S. Food and Drug Administration (FDA), 2021-05-12. [Video recording] [slides]
https://doi.org/10.5281/zenodo.4633732

Carole Goble (2021): FAIRy stories: the FAIR Data principles in theory and in practice. NSF Convergence Accelerator Series Tracks A&B, 2021-05-19

Stian Soiland-Reyes (2021):
Data provenance with RO-Crate.
EOSC-Life retreat 2021, Provenance of tools and workflows; FAIRification of workflows, 2021-05-19.

Nick Thieberger, Marco La Rosa (2021):
Collection data management and repatriation of archival materials back to their source communities. 7th International Conference on Language Documentation & Conservation (ICLDC) [video recording]

Carole Goble, Stian Soiland-Reyes (2021): RO-Crate: A framework for packaging research products into FAIR Research Objects.
RDA IG Data Fabric: FAIR Digital Objects 2021-02-25. [Video recording] [slides]

Carole Goble (2021): The swings and roundabouts of a decade of fun and games with Research Objects.
17th Italian Research Conference on Digital Libraries (IRCDL 2021) Padova, Italy, 2021-02-18. [Video recording]

Marc Portier (2021): Open Science: the WorkZones. Open Belgium 2021, 2021-03-24. [video recording [slides]

Stian Soiland-Reyes, Carole Goble (2021):
RO-Crate: Describing and packaging FAIR Research Objects.
Scottish Covid-19 Response Consortium, 2021-03-18 https://doi.org/10.5281/zenodo.4633655

Stian Soiland-Reyes, Carole Goble (2021):
Publishing workflows in WorkflowHub.eu using CWL, and packaging with RO-Crate.
2021 Common Workflow Language Virtual Conference [video recording]

Mike Lynch (2021): Arkisto: an open-source, standards-based framework for digital preservation Linux.conf.au 2021, 2021-01-23. [video recording]

Marco La Rosa, Peter Sefton (2021): Describo and RO-Crate - the FAIR data research helpers.
Cloud Storage Services for Synchronization and Sharing (CS3)

2020

Peter Sefton (2020):
Progress report on using Schema.org, additional vocabularies and ad-hoc terms to describe and package research diverse research data collection using Research Object Crate v.1.1.
Australian Vocabulary Special Interest Group (AVSIG, 2020-12-01. [video recording]

Stephanie Walton, Laurence Livermore, Olaf Bánki, Robert W. N. Cubey, Robyn Drinkwater, Markus Englund, Carole Goble, Quentin Groom, Christopher Kermorvant, Isabel Rey, Celia M Santos, Ben Scott, Alan R. Williams, Zhengzhe Wu (2020):
Landscape Analysis for the Specimen Data Refinery.
Research Ideas and Outcomes 6:e57602 https://doi.org/10.3897/rio.6.e57602

Peter Sefton (2020):
Using schema.org in RO-crate.
Australian Vocabulary Special Interest Group (AVSIG, 2020-06-02. [video recording

Stian Soiland-Reyes (2020): Packaging workflows with RO-Crate FAIR Workflows workshop at International FAIR Convergence Symposium_, 2020-11-30. Video recording Slides

Michael L. Nelson, Herbert Van de Sompel (2020):
A 25 Year Retrospective on D-Lib Magazine.
arXiv:2008.11680 [cs.DL]

Tomasz Miksa, Maroua Jaoua, Ghaith Arfaoui (2020):
Research Object Crates and Machine-actionable Data Management Plans.
First Workshop on Data and Research Objects Management for Linked Open Science (DaMaLOS) at The 19th International Semantic Web Conference (ISWC 2020).
[article] [slides] [video] https://doi.org/10.4126/frl01-006423291

Carole Goble (2020): The swings and roundabouts of a decade of fun and games with Research Objects.
First Workshop on Data and Research Objects Management for Linked Open Science (DaMaLOS) at The 19th International Semantic Web Conference (ISWC 2020).
https://doi.org/10.4126/frl01-006423950

Peter Sefton, Nick Thieberger, Marco La Rosa, Michael Lynch (2020): An open, composable standards–based research eResearch platform: Arkisto.
eResearch Australasia 2020

Stian Soiland-Reyes, Ignacio Eguinoa (2020):
Packaging workflows with RO-Crate.
Workshop on FAIR Computational Workflows, 19th European Conference on Computational Biology (ECCB 2020).
https://doi.org/10.5281/zenodo.4011999

Simone Leo, Salvador Capella-Gutierrez (2020):
Testing workflows: Life Monitor and OpenEBench.
Workshop on FAIR Computational Workflows, 19th European Conference on Computational Biology (ECCB 2020).

Gavin Kennedy (2020):
Interoperable Research Workspaces and the Mesh.
CS3 2020 - Cloud Storage Synchronization and Sharing Services, 2020-01-27 / 2020-01-29, Copenhagen, Denmark.

2019

Peter Sefton, Eoghan Ó Carragáin, Carole Goble, Stian Soiland-Reyes (2019):
Introducing RO-Crate: research object data packaging.
eResearch Australasia 2019, 2019-10-21/2019-10-25, Brisbane, Australia. [slides] [abstract]

Nick Thieberger, Amanda Harris (2019):
Be Not Like the Wind: Access to Language and Music Records, Next Steps.
Proceedings of the 1st International Conference on Language Technologies for All (LT4All), pp. 101-103. Paris, December 2019. European Language Resources Association (ELRA).
https://lt4all.elra.info/proceedings/lt4all2019/pdf/2019.lt4all-1.26.pdf

Mike Lynch:
Publishing versioned datasets using OCFL and nginx.
eResearch Australasia 2019, 2019-10-21/2019-10-25, Brisbane, Australia.

Peter Sefton, Mike Lynch:
FAIR Simple Scalable Static Research Data Repository.
eResearch Australasia 2019, 2019-10-21/2019-10-25, Brisbane, Australia.

Eoghan Ó Carragáin, Carole Goble, Peter Sefton, Stian Soiland-Reyes (2019):
RO-Crate, a lightweight approach to Research Object data packaging..
RO-15 at Workshop on Research Objects (RO 2019), IEEE eScience 2019, 2019-09-24, San Diego, CA, USA.
https://doi.org/10.5281/zenodo.3337883 [slides]

Kyle Chard, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Jarek Nabrzyski, Victoria Stodden, Ian Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis (2019):
Application of BagIt-Serialized Research Object Bundles for Packaging and Re-execution of Computational Analyses.. at Workshop on Research Objects (RO 2019), IEEE eScience 2019, 2019-09-24, San Diego, CA, USA. 2019 IEEE 15th International Conference on e-Science (e-Science). https://doi.org/10.1109/eScience.2019.00068 [preprint]

Eoghan Ó Carragáin; Carole Goble; Peter Sefton; Stian Soiland-Reyes (2019): A lightweight approach to research object data packaging Bioinformatics Open Source Conference (BOSC2019), 2019-07-24/2019-07-25, Basel, Switzerland. https://doi.org/10.5281/zenodo.3250687

Eoghan Ó Carragáin, Carole Goble, Peter Sefton, Stian Soiland-Reyes (2019):
RO-Crate, a lightweight approach to Research Object data packaging [version 1; not peer reviewed].
Poster at Bioinformatics Open Source Conference (BOSC2019). F1000Research 2019, 8(ISCB Comm J):1197 (poster)
https://doi.org/10.7490/f1000research.1117130.1

Eoghan Ó Carragáin, Carole Goble, Peter Sefton, Stian Soiland-Reyes (2019):
RO-Crate, a lightweight approach to Research Object data packaging [version 1; not peer reviewed].
Talk at Bioinformatics Open Source Conference (BOSC2019). F1000Research 2019, 8(ISCB Comm J):1196 (slides)
https://doi.org/10.7490/f1000research.1117129.1 [slides]

Peter Sefton (2019):
DataCrate - a progress report on packaging research data for distribution via your repository.
https://eresearch.uts.edu.au/2019/07/01/DataCrate-OR2019.htm
Talk at Open Repositories (OR2019), Hamburg, 2019-06-11

Peter Sefton (2019):
What’s in a package? Data packaging overview.
[slides] at Open Repositories (OR2019), Hamburg, 2019-06-10

Stian Soiland-Reyes; Carole Goble (2019):
Research Object.
Research Data Packaging Workshop at Open Repositories (OR2019), Hamburg, 2019-06-10.
https://slides.com/soilandreyes/2019-06-10-ro-or2019

Peter Sefton (2019):
Research Data Packaging
Research Data Packaging Workshop at Open Repositories (OR2019), Hamburg, 2019-06-10.
[slides]

2018

Peter Sefton, Michael Lynch, Liz Stokes, Gerard Devine (2018):
Launching DataCrate v1.0 a general purpose data packaging format for research data distribution and web-display.
Talk at eResearch Australasia 2018 https://eresearch.uts.edu.au/2018/11/01/launch_datacrate_1.htm

Peter Sefton, Gerard Devine, Christian Evenhuis, Michael Lynch, Sharyn Wise, Michael Lake, Duncan Loxton (2018):
DataCrate: a method of packaging, distributing, displaying and archiving Research Objects. Talk at Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands. https://doi.org/10.5281/zenodo.1445817 [abstract] [slides]

Research Object publications

See also publications about Research Objects which includes work pre-dating RO-Crate and about Research Objects in general.

Upcoming and recent events

To suggest an event, either edit and raise pull request or raise issue using your GitHub account.

Bioinformatics Open Source Conference (BOSC2023)+hackfest, 2023-07-24/–28, ISMB/ECCB 2023, Lyon, France.

Galaxy Community Conference 2023 (GCC2023), 2023-07-17/–23, Minneapolis, Minnesota, US.

Information-communication technologies enhanced Social Sciences and Humanities (ICTeSSH), June 2023, (location TBD). Workshop proposals by 2023-01-15.

20th IEEE International Conference on Software Architecture (ICSA 2023), L’Aquila, Italy, 2023-03-13/–17. Artifact Evaluation Track due 2023-01-08.

ELIXIR All Hands 2023, 2023-06-05/–08, Dublin, Ireland. Workshop submissions due 2023-01-23.

Open Repositories 2023 (OR2023), 2023-06-12/–15, Stellenbosch, Cape Town, South Africa. Proposal due 2023-01-15.

Semantic Web Applciations and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023-02-13/–16, Basel, CH.

2023 Common Workflow Language Conference (CWLCon 2023). 2023-02-27/-03-03, virtual.

1st BioHackathon Germany. 1st BioHackathon Germany, Lutherstadt Wittenberg - Leucorea, GE, 2022-12-12/–16 incl. project on DataPLANT, ELIXIR:GA4GH, FAIR Computational Workflows

ELIXIR Biohackathon 2022 2022-11-07/–11, Paris, France. Projects include Bioschemas, Galaxy w/RO-Crate+RDM, Linked Open Science, Schema.org datafeeds, Workflow Execution Service

International conference on FAIR Digital Objects, 2022-10-26/–28, Leiden, Netherlands incl. talk on Updating Linked Data practices and posters on RO-Crate, Galaxy Workflow Run Crate, Specimen Data Refinery workflows

~~3rd Workshop on Research Objects, Metadata and Management for Linked Open Science - DaMaLOS 2022~~ (cancelled)

Workshop on Data and Research Objects Management for Linked Open Science (DaMaLOS) 2021-10-24, 20th International Semantic Web Conference (ISWC 2021).

International Conference on Theory and Practice of Digital Libraries (TPDL), 2022-10-20/2022-10-23, topics incl. FAIR data and software, Research objects, Nanopublications, Linked Data, Digital Preservation.

eResearch Australasia 2022-10-17/–21, Brisbane, Australia

Helmholtz Metadata Collaboration Conference, 2022-10-05/–06, virtual.

ELIXIR Biohackathon Europe 2021 2021-11-08/2020-11-12, Hybrid. Projects proposed for RO-Crate and WorkflowHub.

ELIXIR Biohackathon Europe 2020 2020-11-09/2020-11-13, Virtual. Project on Galaxy export of RO-Crate.

Workshop on Data and Research Objects Management for Linked Open Science (DaMaLOS) 2020-11-02, 19th International Semantic Web Conference (ISWC 2020).

FAIR Computational Workflows workshop (2020-09-02) at the 19th European Conference on Computational Biology (ECCB 2020).

BCC2020 CollaborationFest (2020-07-22 / 2020-07-23) topic Exporting RO-Crate/BioCompute-Object packaged workflows from Galaxy made a first release of the RO-Crate Python library.

Virtual COVID-19 BioHackathon (2020-04-05 / 2020-04-11) topic WorkflowHub launched https://covid19.workflowhub.eu/ with RO-Crate support.

ELIXIR Biohackathon Europe 2019 2019-11-18/2019-11-22, Paris, France. Project on Research Object shape profiles.

eResearch Australasia 2019 2019-10-21/2019-10-25. Data Packaging birds of a feather session.

Workshop on Research Objects 2019 (RO2019). Workshop at IEEE eScience 2019, 2019-09-24, San Diego, CA, USA. http://www.researchobject.org/ro2019/

Research Data Packaging Workshop at Open Repositories (OR2019), 2019-06-10, Hamburg, Germany. [trip report] https://or2019.blogs.uni-hamburg.de/workshops/

Workshop on Research Objects 2018 (RO2018). Workshop at IEEE eScience 2018, 2018-10-29, Amsterdam, The Netherlands. http://www.researchobject.org/ro2018/

Approaches to Research Data Packaging BoF meeting at RDA 11th Plenary 2018-03-22, Berlin, Germany. https://rd-alliance.org/approaches-research-data-packaging-rda-11th-plenary-bof-meeting

RO-Crate logo

The below RO-Crate logos can be used by for application, websites, posters, slides etc. for work that use, implement or support RO-Crate according to the specification, ideally linking to https://w3id.org/ro/crate. To ask permission for any other use, raise an issue.

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